Keep in mind as well that the one part that is supposed to be straight is the top rib, as that is what actually guides the saw, router, etc. The part of the rail next to the splinter guard is neither guaranteed straight nor should be relied on as such, which is why the recommendation is to leave on the splinter guard. The back side of the rail can't be guaranteed straight, either, but it should be more coplanar with the rib than the splinter guard side.
Also, since the splinter guard is pliable and can move or fall off, it's not recommended to use that as a reference surface for determining straightness.